Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs11342191 | chr5:127431013 | GT/G | 0.000152 | 178 | 16.17 | 13.95 | 7.87 | KM Plot |
| PAAD | rs113442694 | chr1:227569107 | A/T | 7.67E-5 | 174 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs113501522 | chr2:70481589 | TA/T | 0 | 177 | 15.3 | 18.43 | 1.03 | KM Plot |
| PAAD | rs113507850 | chr16:74691457 | T/C | 4.26E-5 | 173 | 16.03 | 13.08 | 6.22 | KM Plot |
| PAAD | rs113512380 | chr11:73556976 | A/G | 1.94E-6 | 177 | 15.57 | 15.33 | 3.43 | KM Plot |
| PAAD | rs11365798 | chr13:28074414 | AG/A | 8.12E-7 | 175 | 15.2 | 17.4 | 3.5 | KM Plot |
| PAAD | rs11368015 | chr12:104699138 | TA/T | 1.79E-12 | 173 | 1.37 | 15.8 | 15.62 | KM Plot |
| PAAD | rs113712977 | chr8:72552282 | T/C | 5.01E-8 | 174 | 15.72 | 12.2 | 3.17 | KM Plot |
| PAAD | rs113734516 | chr2:70434619 | C/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs113763880 | chr2:70424565 | G/A | 0 | 177 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs113792094 | chr2:70473773 | T/C | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs113796212 | chr17:12903069 | G/A | 3.43E-6 | 175 | 16.05 | 15.47 | 7.77 | KM Plot |
| PAAD | rs113839093 | chr21:44067757 | C/T | 1.77E-12 | 172 | 15.48 | 17.03 | 1.37 | KM Plot |
| PAAD | rs113863696 | chr2:70449780 | G/A | 0 | 175 | 15.42 | 17.32 | 1.03 | KM Plot |
| PAAD | rs113912774 | chr2:217894173 | G/A | 0.000141 | 178 | 16.07 | 14.47 | 7.2 | KM Plot |